The PICAchooser package

PICAchooser is a suite of simple gui tools for scanning through MELODIC probabilistic ICA runs and quickly making decisions about which components are worth keeping, and what relates to what. These tools each only do one thing, but they do them quickly and easily using only keyboard input. Current programs are PICAchooser, melodicomp, and grader.

HTML documentation is here: http://picachooser.readthedocs.io/en/latest/

Contents

• PICAchooser (the package)
• What’s in here?
  • PICAchooser
  • melodicomp
• A note on component numbering
• Support
• Additional packages used
  • pyqtgraph:
  • nibabel:
  • numpy:
  • scipy:
  • pandas:
• Installation
  • Required dependencies
  • Installing from pypi (NEW!)
  • Installing with conda
  • Installing PICAchooser
  • Updating
• Docker installation
• Singularity installation
• PICAchooser (the program)
  • Usage
  • Example
  • Controls
  • Input file specification
  • Other command line options
  • * Configuration changes
  • Outputs
  • Reprocessing fmriprep AROMA analyses
• melodicomp
  • Usage
  • Controls
  • Output
• rtgrader
  • Usage
• Contributing to PICAchooser
  • Style Guide

History:

• What’s new
  • Version 1.5.2 (8/26/25)
  • Version 1.5.1 (8/22/25)
  • Version 1.5.0 (8/21/25)
  • Version 1.4.9.1 (12/31/24)
  • Version 1.4.9 (11/18/24)
  • Version 1.4.8 (8/4/24)
  • Version 1.4.7 (6/18/24)
  • Version 1.4.6 (2/23/24)
  • Version 1.4.5 (9/13/23)
  • Version 1.4.4 (6/29/23)
  • Version 1.4.3 (6/9/23)
  • Version 1.4.2 (5/11/23)
  • Version 1.4.1 (2/14/23)
  • Version 1.4.0 (2/9/23)
  • Version 1.3.1.2 (8/19/22)
  • Version 1.3.1.1 (8/19/22)
  • Version 1.3.1 (8/19/22)
  • Version 1.3.0 (9/8/21)
  • Version 1.2.3 (4/6/20)
  • Version 1.2.2 (4/5/20)
  • Version 1.2.1 (4/5/20)
  • Version 1.2.0 (4/5/20)
  • Version 1.1.4 (4/3/20)
  • Version 1.1.0 (4/3/20)
  • Version 1.0.2 (11/24/20)
  • Version 1.0.1 (6/30/20)
  • Version 1.0.0 (6/3/20)
  • Version 1.0.0rc13 (6/1/20)
  • Version 1.0.0rc12 (5/21/20)
  • Version 1.0.0rc11 (5/15/20)
  • Version 1.0.0rc10 (5/7/20)
  • Version 1.0.0rc9 (4/27/20)
  • Version 1.0.0rc8 (4/27/20)
  • Version 1.0.0rc7 (4/26/20)
  • Version 1.0.0rc6 (4/25/20)
  • Version 1.0.0rc5 (4/25/20)
  • Version 1.0.0rc4 (4/25/20)
  • Version 1.0.0rc3 (4/24/20)
  • Version 1.0.0rc2 (4/24/20)
  • Version 1.0.0rc1 (4/23/20)

Indices and tables

• Index

• Search Page